A comprehensive on-line resource for quality checked and aligned ribosomal RNA sequence data, free for academic use.
SILVA provides comprehensive, quality checked and regularly updated datasets of aligned small (16S/18S, SSU) and large subunit (23S/28S, LSU) ribosomal RNA (rRNA) sequences for all three domains of life (Bacteria, Archaea and Eukarya).
SILVA are the official databases of the software package ARB.
For more background information
Click here
The software package ARB represents a graphically-oriented, fully-integrated package of cooperating software tools for handling and analysis of sequence information.
The ARB project has been started more than 15 years ago by Wolfgang Ludwig at the Technical University in Munich, Germany, see
www.arb-home.de.
Visit our partner site
www.megx.net, the data portal for Marine Ecological Genomix, to get a feeling how your research can be improved using integrated databases.
Pruesse, E., C. Quast, K. Knittel, B. Fuchs, W. Ludwig, J. Peplies, and F. O. Glöckner. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB.
Nuc. Acids Res. 2007; Vol. 35, No. 21, p. 7188-7196
The SILVA Databases and Tools on this web portal are free for academic use.
More ...
If you are interested in the usage of SILVA within a non-academic/commercial environment, please send an e-mail to:
The SILVA website was optimized for
Mozilla Firefox 2.0 and higher with at least 1024x768 pixel screen resolution.
A brand new version (102) of the "All Species Living Tree" has been released. Besides an updated 16S rRNA database a 23S rRNA database with 792 type strains is now also available
Registration open since August 17!
Back from summer break we upgraded the webpage in the backbone and frontend. Please check it out and if you find problems, tell us.
| SSU | LSU | |
|---|---|---|
| Release version | 103 | 103 |
| Release date | 01.06.2010 | 01.06.2010 |
| Aligned rRNA sequences | 1,353,677 | 191,164 |
| SSU Parc | SSU Ref | LSU Parc | LSU Ref | |||
|---|---|---|---|---|---|---|
| Minimal length | 300 | 1200/900 | 300 | 1900 | ||
| Quality filtering | basic | strong | basic | strong | ||
| Guide Tree | no | yes | yes | yes | ||
| Release version | 102 | 102 | 102 | 102 | ||
| Release date | 15.02.10 | 15.02.10 | 15.02.10 | 15.02.10 | ||
| Aligned rRNA sequences | 1,246,462 | 460,783 | 180,344 | 16,966 |
Yahoo ARB & SILVA User Group.