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SILVA

Welcome to the SILVA rRNA database project

A comprehensive on-line resource for quality checked and aligned ribosomal RNA sequence data.

SILVA provides comprehensive, quality checked and regularly updated datasets of aligned small (16S/18S, SSU) and large subunit (23S/28S, LSU) ribosomal RNA (rRNA) sequences for all three domains of life (Bacteria, Archaea and Eukarya).

SILVA are the official databases of the software package ARB.

For more background information Opens internal link in current windowClick here

SILVAngs

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Check out our service for Next Generation Amplicon data

SILVA Alignment, Classification and Tree (ACT) Service

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The SILVA ACT service combines alignment, search and classify as well as reconstruction of trees in a single web application.

SILVA ACT is available at: Opens internal link in current windowwww.arb-silva.de/act

SILVA Tree Viewer

SILVA Tree Viewer

The SILVA Tree Viewer is a web application to browse and query the SILVA guide trees.

A technical preview is available at Opens external link in new windowwww.arb-silva.de/treeviewer.

ARB

Example phylogenetic tree in radial format.

The software package ARB represents a graphically-oriented, fully-integrated package of cooperating software tools for handling and analysis of sequence information.

The ARB project has been started more than 15 years ago by Wolfgang Ludwig at the Technical University in Munich, Germany, see Opens external link in new windowwww.arb-home.de.

UniEuk

UniEuk

SILVA is a member of the Opens external link in new windowUniEuk project, a community-based project to achieve a universal taxonomic framework for Eukaryotes, focused primarily on protists. UniEuk is integrating information from relevant genetic markers and classical morphology-based data, validated by a comprehensive network of taxonomy experts.

Citations

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Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Glöckner FO (2013) The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Opens external link in new windowNucl. Acids Res. 41 (D1): D590-D596.

For the taxonomic framework:

Yilmaz P, Parfrey LW, Yarza P, Gerken J, Pruesse E, Quast C, Schweer T, Peplies J, Ludwig W, Glöckner FO (2014) The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks. Opens external link in new windowNucl. Acids Res. 42:D643-D648

Opens internal link in current windowFurther references

SILVA Terms of Use/License Information

As of release 138 the SILVA databases, its taxonomy, and all files provided for download are licensed unter Opens external link in new windowCreate Commons Attribution 4.0 (CC-BY 4.0).

All data is freely available for academic and commercial use as long as SILVA is credited as original author and a link to the full license is provided.

Releases before SILVA 138 are not affected by the new license. Please refer to the license file provided in each download directory for the license associated with the provided files.

Partners

Please visit our partners. They facilitate the SILVA  database project.

          

SILVA RSS Feed + ARB & SILVA User Group

News

02.09.2020

SILVAngs updated to SILVA r138.1

We have updated our amplicon analysis pipeline SILVAngs to SILVA release 138.1.


27.08.2020

SILVA 138.1 released

SILVA 138.1 is an update of the SSU 138 full release providing corrections to the SILVA SSU taxonomy as well as updating the LSU sequence data and taxonomy to match the SSU release.
SILVAngs will be updated to 138.1 early next week.


11.04.2020

Happy Easter and Stay Healthy

A Happy Easter from the SILVA Team. Working hard from home to get the next SILVA update release on SSU and LSU 138 done. Stay healthy to fight COVID-19 together.


21.12.2019

Merry Christmans & Happy New Year 2020

The SILVA Team wishes you a Merry Christmas & Happy New Year. Many thanks for all your feedback and support to improve SILVA and SILVAngs. Looking forward to see you again in 2020.


User satisfaction survey

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SILVA is now part of the German Network for Bioinformatics Infrastructure de.NBI

To evaluate and improve our quality of service we need your feedback. Please help us by participating in this short Opens external link in new windowsurvey.

SILVA SSU 138.1 update release

    SSU
Parc
SSU
Ref NR 99
LSU
Parc
LSU
Ref NR 99
Minimal length   300 1200/900 300 1900
Quality filtering   basic strong basic strong
Guide Tree   no yes no yes
Release date   27.08.20 27.08.20 27.08.20 27.08.20
Aligned rRNA sequences   9,469,124 510,508 1,312,534 95,286

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