A comprehensive on-line resource for quality checked and aligned ribosomal RNA sequence data, free for academic use.
SILVA provides comprehensive, quality checked and regularly updated datasets of aligned small (16S/18S, SSU) and large subunit (23S/28S, LSU) ribosomal RNA (rRNA) sequences for all three domains of life (Bacteria, Archaea and Eukarya).
SILVA are the official databases of the software package ARB.
For more background information
Click here
The software package ARB represents a graphically-oriented, fully-integrated package of cooperating software tools for handling and analysis of sequence information.
The ARB project has been started more than 12 years ago by Wolfgang Ludwig at the Technical University in Munich, Germany, see
www.arb-home.de.
Visit our partner site
www.megx.net, the data portal for Marine Ecological Genomix, to get a feeling how your research can be improved using integrated databases.
Pruesse, E., C. Quast, K. Knittel, B. Fuchs, W. Ludwig, J. Peplies, and F. O. Glöckner. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB.
Nuc. Acids Res. 2007; Vol. 35, No. 21, p. 7188-7196
The SILVA Databases and Tools on this web portal are free for academic use.
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If you are interested in the usage of SILVA within a non-academic/commercial environment, please send an e-mail to:
Pat Schloss compared three different rRNA alignments and SILVA has become the reference. Read more...
SILVA Release 102 with more than 1.4 million rRNAs is now scheduled for February 2010. Click on more to see the first statistics.
We thank you for your overwhelming interest in our ARB/SILVA workshops! The course was again fully booked within just 48h!
| SSU Parc | SSU Ref | LSU Parc | LSU Ref | |||
|---|---|---|---|---|---|---|
| Minimal length | 300 | 1200/900 | 300 | 1900 | ||
| Quality filtering | basic | strong | basic | strong | ||
| Guide Tree | no | yes | yes | yes | ||
| Release version | 100 | 100 | 100 | 100 | ||
| Release date | 01.08.09 | 01.08.09 | 01.08.09 | 01.08.09 | ||
| Aligned rRNA sequences | 995,747 | 409,907 | 161,017 | 14,426 |
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