SILVA

Welcome to the SILVA rRNA database project

A comprehensive on-line resource for quality checked and aligned ribosomal RNA sequence data.

SILVA provides comprehensive, quality checked and regularly updated datasets of aligned small (16S/18S, SSU) and large subunit (23S/28S, LSU) ribosomal RNA (rRNA) sequences for all three domains of life (Bacteria, Archaea and Eukarya).

SILVA are the official databases of the software package ARB.

For more background information Opens internal link in current windowClick here

ARB

The software package ARB represents a graphically-oriented, fully-integrated package of cooperating software tools for handling and analysis of sequence information.

The ARB project has been started more than 15 years ago by Wolfgang Ludwig at the Technical University in Munich, Germany, see Opens external link in new window www.arb-home.de.

The MEGX.net data portal

Visit our partner site www.megx.net, the data portal for Marine Ecological Genomix, to get a feeling how your research can be improved using integrated databases.

SILVA Terms of Use/License Information

SILVA uses a dual licensing model. In short, browsing and deploying the SILVA database content displayed on the SILVA webportal is free for all (academic and non-academic users) whereas all downloads are only free for academic users. Both, academic and non-academic users should have a look at the SILVA Terms of Use/License Information for more details.

SILVA RSS Feed + ARB & SILVA User Group

Partners

Please visit our partners. They facilitate the SILVA  database project.

          

News

03.03.2013

Meet ARB & SILVA at VAAM 2013

Talk to the ARB and SILVA developers at VAAM 2013 (10.03-13.03) in Bremen, Germany. Follow the link to see the sessions where you will find us.


18.02.2013

LTP 111 released

Version 111 of the "All Species Living Tree" (LTP) has been released. Check the project website (link above) for more information ...


09.02.2013

ARB & SILVA at Biosystematics 2013

Join us at the Software Bazar at Biosystematics in Vienna, February 18-22, 2013.


09.02.2013

SILVA Stickers have arrived!

If you like one - contact us. We are happy to ship them to you.


SILVA 111 - full release

      SSU Parc SSU Ref SSU Ref NR LSU Parc LSU Ref
Minimal length     300 1200/900 1200/900 300 1900
Quality filtering     basic strong strong basic strong
Guide Tree     no yes yes no yes
Release version     111 111 111 111 111
Release date     27.07.12 27.07.12 27.07.12 27.07.12 27.07.12
Aligned rRNA sequences     3,194,778 739,633 286,858 288,717 29,306

SILVA 114 - web release (Ref datasets and ARB files not updated)

  SSU LSU
Release date 23.01.2013   23.01.2013
Aligned rRNA sequences  3,672,787   342,248

Citations

Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Glöckner FO (2013) The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Opens external link in new windowNucl. Acids Res. 41 (D1): D590-D596.

If you use SINA please cite:

Pruesse, E, Peplies, J and Glöckner, FO (2012) SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes. Opens external link in new windowBioinformatics, 28, 1823-1829