SILVA provides comprehensive, quality checked and regularly updated datasets of aligned small (16S/18S, SSU) and large subunit (23S/28S, LSU) ribosomal RNA (rRNA) sequences for all three domains of life (Bacteria, Archaea and Eukarya).
For background information click here.
SILVA is a Global Core Biodata Resource and ELIXIR Core Data Resource.
SSU Parc | SSU Ref NR 99 | LSU Parc | LSU Ref NR 99 | |
|---|---|---|---|---|
300 | 1200/900 | 300 | 1900 | |
| Quality filtering | basic | strong | basic | strong |
| Guide Tree | no | yes | no | yes |
| Release date | 11.07.24 | 11.07.24 | 11.07.24 | 11.07.24 |
| Aligned rRNA sequences | 9,469,070 | 510,495 | 1,312,521 | 95,279 |
The Leibniz Institute DSMZ establishes an integrated suite of scientific databases of fundamental relevance for the life sciences. The databases include BRENDA, SILVA, LPSN, BacDive and TYGS which are developed in a highly coordinated manner. The resulting data platform DSMZ Digital Diversity will provide an integrated resource and will allow to link and comprehensively analyse the different types of scientific data from all domains of life sciences.
SILVA is part of the German Network for Bioinformatics Infrastructure de.NBI. Help us to improve SILVA and the network by rating our service in the de.NBI survey.
The List of Prokaryotic names with Standing in Nomenclature (LPSN) is used during curation of the SILVA taxonomy. SILVA adopted the EukMap application as TaxMap to provide a visual version of LPSN’s taxonomic opinion based on validly published and correct names according to the rules of ICNP. It facilitates the navigation of the prokaryotic taxonomy derived from LPSN's taxonomic perspective.